fv3
Note
The uwtools drivers are idempotent, meaning that actions they successfully complete during one invocation are not repeated in subsequent invocations. For example, an asset like a configuration file will not be recreated when the driver is run again, even if its UW YAML configuration changes. To force recreation, remove the asset(s) in question – up to and including the entire provisioned run directory – then re-run the driver, which will recreate any missing assets based on the current configuration.
The uw mode for configuring and running FV3.
uw fv3 --help
usage: uw fv3 [-h] [--version] [--show-schema] TASK ...
Execute fv3 tasks
Optional arguments:
-h, --help
Show help and exit
--version
Show version info and exit
--show-schema
Show driver schema and exit
Positional arguments:
TASK
boundary_files
Lateral boundary-condition files
diag_table
The diag_table file
field_table
The field_table file
files_copied
Files copied for run
files_linked
Files linked for run
model_configure
The model_configure file
namelist_file
The namelist file
provisioned_rundir
Run directory provisioned with all required content
restart_directory
The RESTART directory
run
A run
runscript
The runscript
show_output
Show the output to be created by this component
validate
Validate the UW driver config
All tasks take the same arguments. For example:
uw fv3 run --help
usage: uw fv3 run --cycle CYCLE [-h] [--version] [--config-file PATH]
[--batch] [--dry-run] [--graph-file PATH]
[--key-path KEY[.KEY...]] [--schema-file PATH] [--quiet]
[--verbose]
A run
Required arguments:
--cycle CYCLE
The cycle in ISO8601 format (e.g. yyyy-mm-ddThh)
Optional arguments:
-h, --help
Show help and exit
--version
Show version info and exit
--config-file PATH, -c PATH
Path to UW YAML config file (default: read from stdin)
--batch
Submit run to batch scheduler
--dry-run
Only log info, making no changes
--graph-file PATH
Path to Graphviz DOT output [experimental]
--key-path KEY[.KEY...]
Dot-separated path of keys to driver config block
--schema-file PATH
Path to schema file to use for validation
--quiet, -q
Print no logging messages
--verbose, -v
Print all logging messages
Examples
The examples use a configuration file named config.yaml. Its contents are described in depth in section fv3. Each of the values in the fv3 YAML may contain Jinja2 variables/expressions using a cycle variable, which is a Python datetime object corresponding to the FV3 cycle being run.
Run FV3 on an interactive node
$ uw fv3 run --config-file config.yaml --cycle 2024-02-11T12
The driver creates a
runscript.fv3file in the directory specified byrundir:in the config and runs it, executing FV3.Run FV3 via a batch job
$ uw fv3 run --config-file config.yaml --cycle 2024-02-11T12 --batch
The driver creates a
runscript.fv3file in the directory specified byrundir:in the config and submits it to the batch system. Running with--batchrequires a correctly configuredplatform:block inconfig.yaml, as well as appropriate settings in theexecution:block underfv3:.Specifying the
--dry-runflag results in the driver logging messages about actions it would have taken, without actually taking any.$ uw fv3 run --config-file config.yaml --cycle 2024-02-11T12 --batch --dry-run
The
--key-pathoption can be used to navigate from the top of the config to the driver’s configuration block. For example, specifying--key-path foo.barwith configfoo: bar: driver: # driver config block
is equivalent to using config
driver: # driver config block
without specifying
--key-path.
The
runtask depends on the other available tasks and executes them as prerequisites. It is possible to execute any task directly, which entails execution of any of its dependencies. For example, to create an FV3 run directory provisioned with all the files, directories, symlinks, etc. required per the configuration file:$ uw fv3 provisioned_rundir --config-file config.yaml --cycle 2024-02-11T12 --batch
Specifying the
--show-schemaflag, with no other options, prints the driver’s schema:uw fv3 --show-schema >schema head -n20 schema{ "properties": { "fv3": { "additionalProperties": false, "allOf": [ { "if": { "properties": { "domain": { "const": "regional" } } }, "then": { "required": [ "lateral_boundary_conditions" ] } } ],Use the
--schema-fileoption to specify a custom JSON Schema file with which to validate the driver config. A custom schema could range in complexity from the simplest, most permissive schema,{}, to one based on the internal schema shown by--show-schema.